Pumpkin Cottage Cheese Muffins Recipe
If you’re looking for a delightful treat that combines cozy autumn flavors with a moist and tender crumb, these Pumpkin Cottage Cheese Muffins are an absolute must-try. Imagine bites of subtly sweet pumpkin blended with creamy cottage cheese, spiced just right with cinnamon and pumpkin spice—all wrapped up in a wholesome whole wheat base. They’re perfect for breakfast, snack time, or even a comforting dessert, and the cottage cheese lends a wonderful protein boost while keeping every bite beautifully soft and moist. I promise, once you make these muffins, they’ll become your seasonal favorite in no time!

Ingredients You’ll Need
These ingredients are refreshingly simple yet play crucial roles in delivering the perfect texture, flavor, and color. Together, they create a harmonious blend that’s satisfying and healthy, making these muffins a true standout.
- Pumpkin purée: The star of the show, bringing rich color and natural sweetness along with that signature pumpkin flavor.
- Cottage cheese: Adds moistness and subtle creaminess while packing in protein for a nourishing touch.
- Large eggs: Bind the ingredients and give structure to your muffins.
- Maple syrup (or honey): Provides gentle sweetness with a hint of caramel notes that complement the pumpkin perfectly.
- Vanilla extract: Enhances the flavors and adds warmth to the overall profile.
- Whole wheat flour (or all-purpose flour): Whole wheat adds a nutty texture and fiber, but all-purpose works beautifully for a lighter crumb.
- Baking soda: Helps the muffins rise with a tender crumb.
- Baking powder: Works alongside baking soda for fluffiness.
- Salt: Balances sweetness and deepens the flavors.
- Cinnamon: The quintessential spice that adds warmth and aroma.
- Pumpkin spice: A blend of spices that captures that classic fall essence.
- Melted coconut oil (or butter): Adds richness and keeps your muffins wonderfully moist.
How to Make Pumpkin Cottage Cheese Muffins
Step 1: Mix Wet Ingredients
In a large mixing bowl, whisk together the pumpkin purée, cottage cheese, eggs, maple syrup, vanilla extract, and melted coconut oil until the mixture is smooth and slightly creamy. This step ensures all the moist ingredients combine seamlessly, setting the stage for a tender muffin.
Step 2: Combine Dry Ingredients
In a separate medium bowl, whisk together the whole wheat flour, baking soda, baking powder, salt, cinnamon, and pumpkin spice. This dry mix is packed with the spices and leavening agents needed to bring balance and lift to your muffins.
Step 3: Mix Wet and Dry Ingredients
Gently fold the dry ingredients into the wet mixture using a spatula. Be careful to stir just until combined; overmixing can make the muffins dense rather than airy and soft. This crucial step keeps your muffins light and fluffy.
Step 4: Fill Muffin Cups
Prepare your muffin tin by lining it with paper liners or greasing it with oil. Then, spoon the batter into each cup, filling them about three-quarters full. This prevents overflowing while allowing enough space for the muffins to rise beautifully.
Step 5: Bake
Bake your Pumpkin Cottage Cheese Muffins in a preheated oven at 350°F (175°C) for 18 to 22 minutes. You’ll know they’re done when a toothpick inserted into the center comes out clean, and the tops are lightly golden. The aroma at this point is pure heaven!
Step 6: Cool & Enjoy!
Let the muffins rest in the pan for 5 minutes after baking, then transfer them to a wire rack to cool completely. This cooling time helps the muffins set perfectly, making them easier to handle and enhancing their texture.
How to Serve Pumpkin Cottage Cheese Muffins

Garnishes
While these muffins are delicious on their own, adding a dollop of cream cheese frosting or a sprinkle of chopped nuts can elevate their charm. A light dusting of powdered sugar or a drizzle of maple syrup also makes for a delightful finishing touch that’s both pretty and tasty.
Side Dishes
If you want to turn these muffins into a more rounded breakfast or brunch, serve them alongside a warm cup of chai tea, a fresh fruit salad, or some savory scrambled eggs. The subtle sweetness of the muffins contrasts beautifully with savory sides.
Creative Ways to Present
For a festive flair, serve your Pumpkin Cottage Cheese Muffins stacked with layers of whipped yogurt and sliced fresh fruit. You can also hollow out the center slightly and fill with a cinnamon-spiced cream cheese or nut butter for an extra surprise inside.
Make Ahead and Storage
Storing Leftovers
Keep your muffins fresh by storing them in an airtight container at room temperature for up to three days. For longer storage, refrigerate them where they will stay moist and tasty for about a week.
Freezing
These muffins freeze beautifully, making them a perfect make-ahead treat. Wrap each muffin individually in plastic wrap and place them in a zip-top freezer bag. They’ll keep well for up to three months and thaw quickly whenever you’re ready to enjoy one.
Reheating
To bring your muffins back to life, pop them in a toaster oven or microwave for about 20 seconds until warm. This simple step revives their soft texture and enhances the pumpkin aroma, making them taste freshly baked all over again.
FAQs
Can I substitute the cottage cheese?
Yes! If you prefer, Greek yogurt or ricotta can be used as alternatives. They will offer a similar creamy texture and a bit of protein, but cottage cheese provides the best balance of moisture and mild tang that’s signature to these muffins.
Are these muffins gluten-free?
This recipe uses whole wheat or all-purpose flour, so it is not gluten-free as is. However, you can substitute with a gluten-free flour blend designed for baking, which usually yields great results, though texture might vary slightly.
Can I make these muffins vegan?
To make a vegan version, try using flax or chia eggs as an egg substitute, plant-based yogurt or tofu instead of cottage cheese, and a vegan-friendly sweetener and oil. The texture may differ, but the flavors will still be deliciously pumpkin-y!
How long do these muffins stay fresh?
At room temperature, these muffins taste best within 2-3 days. Refrigerated, they last up to a week. Beyond that, freezing is the best option to maintain their delightful flavor and texture.
Can I add mix-ins like nuts or chocolate chips?
Absolutely! Add a handful of chopped walnuts, pecans, or chocolate chips to the batter before baking for added texture and flavor. Just be careful not to overload the batter to maintain the right muffin rise and crumb.
Final Thoughts
These Pumpkin Cottage Cheese Muffins are one of those rare recipes that feel both indulgent and wholesome at the same time. Whether you’re craving an easy breakfast on a crisp morning or a comforting snack to brighten your afternoon, these muffins deliver every single time. Give them a try, and I’m sure you’ll find yourself coming back to this recipe again and again as the seasons change.
PrintPumpkin Cottage Cheese Muffins Recipe
These Pumpkin Cottage Cheese Muffins are a delicious and nutritious treat blending creamy cottage cheese with vibrant pumpkin purée and warm spices. Perfect for a healthy breakfast or snack, they are moist, tender, lightly sweetened with maple syrup, and have a subtle depth of flavor from cinnamon and pumpkin spice. Made with whole wheat flour, these muffins balance indulgence with wholesome ingredients.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Total Time: 30 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Wet Ingredients
- 1 cup pumpkin purée
- ½ cup cottage cheese
- 2 large eggs
- ⅓ cup maple syrup (or honey)
- 1 tsp vanilla extract
- ¼ cup melted coconut oil (or butter)
Dry Ingredients
- 1 ¼ cups whole wheat flour (or all-purpose flour)
- 1 tsp baking soda
- ½ tsp baking powder
- ½ tsp salt
- 1 tsp cinnamon
- ½ tsp pumpkin spice
Instructions
- Mix Wet Ingredients: In a large mixing bowl, whisk together the pumpkin purée, cottage cheese, eggs, maple syrup, vanilla extract, and melted coconut oil until the mixture is smooth and well combined.
- Combine Dry Ingredients: In a medium mixing bowl, thoroughly whisk together the whole wheat flour, baking soda, baking powder, salt, cinnamon, and pumpkin spice to ensure even distribution of the leavening agents and spices.
- Mix Wet and Dry Ingredients: Gradually fold the dry ingredients into the wet mixture using a spatula. Stir gently and until just combined to avoid overmixing, which can lead to dense muffins.
- Fill Muffin Cups: Line a muffin tin with paper liners or grease it lightly. Spoon the batter into each cup, filling them about three-quarters full to allow room for rising during baking.
- Bake: Preheat the oven to 350°F (175°C). Bake the muffins for 18 to 22 minutes, or until a toothpick inserted into the center comes out clean, indicating they are fully cooked.
- Cool & Enjoy: Remove the muffins from the oven and let them cool in the tin for 5 minutes. Then transfer them to a wire rack to cool completely before serving to enhance texture and flavor.
Notes
- You can substitute maple syrup with honey for a different natural sweetener.
- For a dairy-free version, use a plant-based cottage cheese substitute and coconut oil instead of butter.
- Don’t overmix the batter to keep muffins light and tender.
- Make sure pumpkin purée is pure and not pumpkin pie filling which contains added sugars and spices.
- Whole wheat flour adds more fiber and nutrients, but all-purpose flour may be used for a lighter texture.
Nutrition
- Serving Size: 1 muffin
- Calories: 160
- Sugar: 8g
- Sodium: 180mg
- Fat: 7g
- Saturated Fat: 3g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 20g
- Fiber: 3g
- Protein: 6g
- Cholesterol: 55mg
Keywords: pumpkin muffins, cottage cheese muffins, healthy muffins, fall recipes, whole wheat muffins, pumpkin spice muffins